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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_37589402_37607695_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37589402 - 37607695
Intron Length:
18294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTAGC
5'SS Class:
major
3'SS Sequence:
CCTTTTCACGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TATTACAGATTA
Flanking Amino Acid:
SLAKECPLSQSMISSIVNST
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.1
69.2
41.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
77.2
0.61
0.8
73
30.7
Minor 5ss
35.1
-1.7
2.9
46.4
41.7
Minor BPS
43.9
-0.4
2
59.91
39.4

Associated Gene:

Gene:
SATB1
Ensembl Gene ID:
ENSAPLG00000009362
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029467
37544218 - 37617553
73336
ENSAPLT00000009759
37544218 - 37613766
69549
ENSAPLT00000047546
37546687 - 37613766
67080