About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_37607820_37608547_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37607820 - 37608547
Intron Length:
728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
GTGTTTCAAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
CTTTTCTAATCT
Flanking Amino Acid:
HVVTLKIQLHSCPKLEDLPP
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
82.3
32.2
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
63.3
0.3
1
59.7
40.9
Minor 5ss
40.5
-1.1
2.8
53
44.2
Minor BPS
57.6
0.32
2
78.81
43.9

Associated Gene:

Gene:
SATB1
Ensembl Gene ID:
ENSAPLG00000009362
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029467
37544218 - 37617553
73336
ENSAPLT00000009759
37544218 - 37613766
69549
ENSAPLT00000047546
37546687 - 37613766
67080