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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_37608675_37609546_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37608675 - 37609546
Intron Length:
872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAAT
5'SS Class:
strong_major
3'SS Sequence:
ACATATCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
ATGTACATATCC
Flanking Amino Acid:
YSHSSAAQAKGLIQVGKWNP
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
89.4
23.3
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
65.9
0.36
0.9
58.1
37.4
Minor 5ss
36.8
-1.5
2.9
50.6
45.9
Minor BPS
47.7
-0.1
2
63
42

Associated Gene:

Gene:
SATB1
Ensembl Gene ID:
ENSAPLG00000009362
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047546
37546687 - 37613766
67080
ENSAPLT00000029467
37544218 - 37617553
73336
ENSAPLT00000009759
37544218 - 37613766
69549