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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_37609724_37613530_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37609724 - 37613530
Intron Length:
3807

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACACTT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
GHLMKTNIRKGSMLPVFCVV
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
75.5
40.6
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
90.7
0.92
0.7
88.7
26.8
Minor 5ss
43.4
-0.7
3.2
65.6
45.4
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
SATB1
Ensembl Gene ID:
ENSAPLG00000009362
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047546
37546687 - 37613766
67080
ENSAPLT00000029467
37544218 - 37617553
73336
ENSAPLT00000009759
37544218 - 37613766
69549