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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_37634402_37635204_F

Intron Information:

Intron Rank:
143531
Intron Class:
major
Intron Phase:
Intron Coordinates:
37634402 - 37635204
Intron Length:
803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGGCG
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAGGGAC
U12 Branch Point Sequence:
TTTGTTTTTAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.5
0.34
1.3
53.2
43
Major BPS
38.5
-0.7
1.3
26.5
35.3
Major PPT
82.1
0.72
1
86.9
31.1
Minor 5ss
34
-1.8
3.7
47.7
48
Minor BPS
48.1
-0.2
1.9
59.36
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027331
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048000
37633150 - 37635290
2141