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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_37890872_37892106_F

Intron Information:

Intron Rank:
140076
Intron Class:
major
Intron Phase:
Intron Coordinates:
37890872 - 37892106
Intron Length:
1235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTAT
5'SS Class:
major
3'SS Sequence:
TTCTTTGTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
TTCAGCTGAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
78.6
31.1
Major BPS
61.3
0.28
1
62
30.6
Major PPT
87.3
0.84
0.8
80.2
37.3
Minor 5ss
48
-0.2
2.5
66.9
44.3
Minor BPS
47.3
-0.1
2.2
69.31
47.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025310
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021241
37888842 - 37895666
6825