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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_37901188_37962952_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37901188 - 37962952
Intron Length:
61765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTCCG
5'SS Class:
major
3'SS Sequence:
TGTTCCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TGTTCCTTTACA
Flanking Amino Acid:
DTIATRFDGTHSNFILANAQ
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.3
62.3
43.9
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
86.3
0.82
0.8
80.2
31.9
Minor 5ss
30.5
-2.2
2.8
33
34.3
Minor BPS
77.7
0.87
1.5
84.68
34.6

Associated Gene:

Gene:
KCNH8
Ensembl Gene ID:
ENSAPLG00000013144
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013692
37901112 - 38084175
183064