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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_37963187_37977841_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37963187 - 37977841
Intron Length:
14655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTATCCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTTGAATTAAAT
Flanking Amino Acid:
KGEIMFYKKNGSSFWCLLDI
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1
79.1
37.5
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
86.9
0.83
0.7
80.8
31.2
Minor 5ss
51
0.04
2.8
74.4
41.8
Minor BPS
54.8
0.23
2
79.82
41.4

Associated Gene:

Gene:
KCNH8
Ensembl Gene ID:
ENSAPLG00000013144
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013692
37901112 - 38084175
183064