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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_37977974_37989937_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37977974 - 37989937
Intron Length:
11964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTGTG
5'SS Class:
major
3'SS Sequence:
TTCTGTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTTCTGATTT
Flanking Amino Acid:
VKIAAEDKKEEKWKGRGRAG
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
70
40.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
85.4
0.8
0.8
79.9
32.3
Minor 5ss
38.7
-1.3
3
49.5
46.8
Minor BPS
59.5
0.38
1.7
78.82
37.6

Associated Gene:

Gene:
KCNH8
Ensembl Gene ID:
ENSAPLG00000013144
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013692
37901112 - 38084175
183064