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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_37990066_37993000_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37990066 - 37993000
Intron Length:
2935

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAGGTGTA
5'SS Class:
major
3'SS Sequence:
TTTCTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
GTCTCATTACAT
Flanking Amino Acid:
REKNKLKINNNVFVDKPAFP
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.1
74.4
36.1
Major BPS
73.9
0.59
1
81
30.2
Major PPT
93.6
0.98
0.6
92.4
17.8
Minor 5ss
37.3
-1.4
3.6
52.6
44.9
Minor BPS
49.9
0.07
2
71.29
45

Associated Gene:

Gene:
KCNH8
Ensembl Gene ID:
ENSAPLG00000013144
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013692
37901112 - 38084175
183064