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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_38014264_38019832_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38014264 - 38019832
Intron Length:
5569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAA
U12 Branch Point Sequence:
TTTTCTCTATTT
Flanking Amino Acid:
DLLYAFNVTVVSLVHLLKTV
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
86.2
29.2
Major BPS
66.8
0.42
1.1
69.4
37.7
Major PPT
80.3
0.68
0.8
73.8
36.9
Minor 5ss
38.5
-1.3
2.8
49.8
40.3
Minor BPS
60.6
0.41
1.9
84.33
36.8

Associated Gene:

Gene:
KCNH8
Ensembl Gene ID:
ENSAPLG00000013144
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013692
37901112 - 38084175
183064