About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_38044921_38046287_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38044921 - 38046287
Intron Length:
1367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACCAAA
5'SS Class:
major
3'SS Sequence:
TTTTTTGGTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCTAC
U12 Branch Point Sequence:
TTTTTTTTTTTT
Flanking Amino Acid:
SVNNGIDSNELLKDFPDELR
Intron Amino Acid Position:
526

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.2
74.1
38.3
Major BPS
51.3
0.03
1.3
52.4
42.7
Major PPT
84
0.77
0.9
80.6
37
Minor 5ss
44.2
-0.6
2.7
57.2
47.1
Minor BPS
43.9
-0.3
3.5
78.47
38.5

Associated Gene:

Gene:
KCNH8
Ensembl Gene ID:
ENSAPLG00000013144
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013692
37901112 - 38084175
183064