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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_38046538_38050736_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
38046538 - 38050736
Intron Length:
4199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTATGCTCA
5'SS Class:
weak_major
3'SS Sequence:
TATTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ATTGCTTTCATA
Flanking Amino Acid:
LKDSTVLAILGKGDLIGANL
Intron Amino Acid Position:
609

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
61.6
39.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
90.9
0.92
0.7
89.2
27.2
Minor 5ss
52.6
0.09
2.3
65.8
45.3
Minor BPS
55.5
0.17
1.8
68.85
38.5

Associated Gene:

Gene:
KCNH8
Ensembl Gene ID:
ENSAPLG00000013144
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013692
37901112 - 38084175
183064