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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_38050952_38066215_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38050952 - 38066215
Intron Length:
15264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TGGTTTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
TATTTGTTACAT
Flanking Amino Acid:
YNLREGHESDVISKLSNKST
Intron Amino Acid Position:
681

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
87.3
27
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
79.5
0.66
1
76.9
42.1
Minor 5ss
42.7
-0.8
2.8
59.4
38.1
Minor BPS
48.2
-0
2.3
73.75
43

Associated Gene:

Gene:
KCNH8
Ensembl Gene ID:
ENSAPLG00000013144
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013692
37901112 - 38084175
183064