About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_38072384_38082628_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38072384 - 38082628
Intron Length:
10245

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGAGC
5'SS Class:
major
3'SS Sequence:
CCTGATGTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CATGATTTAATA
Flanking Amino Acid:
KQQISRLNNEVTTLTQEVSQ
Intron Amino Acid Position:
874

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
69.7
40.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
63.7
0.31
1.1
57.3
41.9
Minor 5ss
32.7
-2
3.1
43.6
43.7
Minor BPS
53.5
0.11
1.6
60.8
39.9

Associated Gene:

Gene:
KCNH8
Ensembl Gene ID:
ENSAPLG00000013144
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013692
37901112 - 38084175
183064