About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_38083007_38083109_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38083007 - 38083109
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAG
U12 Branch Point Sequence:
ATTTCAGCAACT
Flanking Amino Acid:
GLHNSPSQYQYALHQRHHYT
Intron Amino Acid Position:
1000

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
1
70.7
41.1
Major BPS
67.2
0.43
1.5
77.4
37.3
Major PPT
90.1
0.9
0.6
88.5
20.9
Minor 5ss
33.6
-1.9
2.9
41
45.3
Minor BPS
49.5
0.05
2.4
80.24
41.2

Associated Gene:

Gene:
KCNH8
Ensembl Gene ID:
ENSAPLG00000013144
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013692
37901112 - 38084175
183064