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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_3817172_3818017_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3817172 - 3818017
Intron Length:
846

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATCA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTAAAT
U12 Branch Point Sequence:
TGTTTTTTGTTT
Flanking Amino Acid:
YLELCIGSFQGFIVAVLYCF
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
73.8
30.8
Major BPS
70
0.5
1.1
76.9
32.8
Major PPT
79.4
0.66
0.9
77.2
37.1
Minor 5ss
37.6
-1.4
3.1
48.6
47.1
Minor BPS
44.5
-0.3
3.4
74.33
37.3

Associated Gene:

Gene:
GHRHR
Ensembl Gene ID:
ENSAPLG00000011541
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026665
3813334 - 3832911
19578
ENSAPLT00000022346
3813235 - 3831497
18263
ENSAPLT00000012089
3813334 - 3832911
19578