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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_38176989_38178540_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38176989 - 38178540
Intron Length:
1552

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTGATTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTTTCCATATTA
Flanking Amino Acid:
NAVVGGLPTTYYPVCGIPTI
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
74
36.3
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
80.9
0.7
0.9
75.9
37.9
Minor 5ss
38.9
-1.2
2.7
53.8
42.8
Minor BPS
64.2
0.44
1.9
80.37
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026271
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025869
38175881 - 38179597
3717