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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_3818836_3820459_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3818836 - 3820459
Intron Length:
1624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
ATATTTTAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAA
U12 Branch Point Sequence:
TTTTCCCCAAAA
Flanking Amino Acid:
IKGPIIISVGVNFVLFINII
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.9
84.4
33.5
Major BPS
78.5
0.71
0.9
69.7
37.1
Major PPT
70.6
0.46
1
67.1
42.3
Minor 5ss
37.9
-1.4
2.7
44.7
42.7
Minor BPS
58.9
0.28
2
78.36
37.5

Associated Gene:

Gene:
GHRHR
Ensembl Gene ID:
ENSAPLG00000011541
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026665
3813334 - 3832911
19578
ENSAPLT00000022346
3813235 - 3831497
18263
ENSAPLT00000012089
3813334 - 3832911
19578