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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_38194246_38197326_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
38194246 - 38197326
Intron Length:
3081

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATACT
5'SS Class:
strong_major
3'SS Sequence:
AACTGTCAAACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
GATATCATAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
86.8
27.8
Major BPS
79.4
0.73
1
80.1
32
Major PPT
58
0.18
1.1
51.8
41.1
Minor 5ss
37.7
-1.4
2.9
52.3
44.3
Minor BPS
59.8
0.38
1.7
75.92
39.8

Associated Gene:

Gene:
RAB5A
Ensembl Gene ID:
ENSAPLG00000020042
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043770
38194177 - 38215647
21471