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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_38197399_38198835_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
38197399 - 38198835
Intron Length:
1437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATAACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTTTCATAACC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71
34.5
Major BPS
100
1.24
0.5
100
0
Major PPT
74.1
0.54
1
68.2
41.6
Minor 5ss
34.6
-1.7
3.5
45.7
49.5
Minor BPS
69.3
0.59
1.6
78.78
36.7

Associated Gene:

Gene:
RAB5A
Ensembl Gene ID:
ENSAPLG00000020042
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043770
38194177 - 38215647
21471