About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_38199086_38202285_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38199086 - 38202285
Intron Length:
3200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAG
U12 Branch Point Sequence:
GTTTCAGCACCT
Flanking Amino Acid:
FHEFQESTIGAAFLTQTVCL
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
82.1
24.6
Major BPS
58.3
0.21
1.7
71.4
45.1
Major PPT
84.7
0.78
0.7
81
30.2
Minor 5ss
27.3
-2.6
2.7
30.6
42.8
Minor BPS
42.9
-0.4
2.5
70.31
46

Associated Gene:

Gene:
RAB5A
Ensembl Gene ID:
ENSAPLG00000020042
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043770
38194177 - 38215647
21471