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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_38202438_38203314_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38202438 - 38203314
Intron Length:
877

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CAATCATTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAA
U12 Branch Point Sequence:
TAATACTCAAGT
Flanking Amino Acid:
AIVVYDITNEESFARAKNWV
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.8
22.5
Major BPS
77.9
0.69
0.8
77.9
25.8
Major PPT
73.1
0.52
0.9
65.4
39.7
Minor 5ss
36
-1.6
2.6
43.5
43.6
Minor BPS
50.4
0.09
2
71.88
44.1

Associated Gene:

Gene:
RAB5A
Ensembl Gene ID:
ENSAPLG00000020042
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043770
38194177 - 38215647
21471