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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_3820530_3821272_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3820530 - 3821272
Intron Length:
743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTCAC
5'SS Class:
major
3'SS Sequence:
GTTATTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CTCTTCTAAATT
Flanking Amino Acid:
ILAKFYFEDTECWDINQGSP
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1.1
66
40.1
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
82.6
0.73
0.8
80.6
36.8
Minor 5ss
35.8
-1.6
2.9
41.2
39.1
Minor BPS
61
0.42
1.7
74.4
43.5

Associated Gene:

Gene:
GHRHR
Ensembl Gene ID:
ENSAPLG00000011541
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026665
3813334 - 3832911
19578
ENSAPLT00000022346
3813235 - 3831497
18263
ENSAPLT00000012089
3813334 - 3832911
19578