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Intron Name: Anas_platyrhynchos_platyrhynchos_2_38205723_38207211_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

38205723 - 38207211

Intron Length:

1489

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTGAGTTTA

5'SS Class:

strong_major

3'SS Sequence:

GTTGATTTTATAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTGAT

U12 Branch Point Sequence:

TTCTTGTTGATT

Flanking Amino Acid:

MNVNEIFMAIAKKLPKNEPQ

Intron Amino Acid Position:

178

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.8

81.9

26.2

Major BPS

81.2

0.78

1.1

71.4

45.1

Major PPT

75.5

0.57

0.9

41.6

Minor 5ss

38.5

-1.3

2.9

45.9

43.7

Minor BPS

56.4

0.28

2.1

77.76

39.6

Associated Gene:

Gene:

RAB5A

Ensembl Gene ID:

ENSAPLG00000020042

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043770

38194177 - 38215647

21471