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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_38210114_38212851_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38210114 - 38212851
Intron Length:
2738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTACA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCACTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGTGCTATAACT
Flanking Amino Acid:
VAGLLHIANIGNVHAVLCKN
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82.4
29.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.3
0.64
0.8
75.4
34
Minor 5ss
42.1
-0.9
2.4
52.1
44.5
Minor BPS
63.4
0.5
1.7
81.57
39.9

Associated Gene:

Gene:
PP2D1
Ensembl Gene ID:
ENSAPLG00000012677
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013189
38205774 - 38213860
8087