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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_38211846_38215145_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
38211846 - 38215145
Intron Length:
3300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTACA
5'SS Class:
strong_major
3'SS Sequence:
TGTCCTTACTGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTGTCCTTACTG
Flanking Amino Acid:
KFHLGGQDAGRWTCKQLQLS
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.6
29.6
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
52.8
0.06
1.7
65.7
40
Minor 5ss
36.1
-1.6
2.6
44
43
Minor BPS
67.5
0.41
1.7
70.86
42.9

Associated Gene:

Gene:
RAB5A
Ensembl Gene ID:
ENSAPLG00000020042
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043770
38194177 - 38215647
21471