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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_38218117_38223994_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38218117 - 38223994
Intron Length:
5878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTAACTTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
TCTCTCTTAACT
Flanking Amino Acid:
MVTAAVRSNFWLPC
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
79.3
31.1
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
79.9
0.67
0.9
73.1
36.8
Minor 5ss
29.2
-2.4
2.5
25
36.8
Minor BPS
80.4
1.03
1.1
88.99
35.6

Associated Gene:

Gene:
KAT2B
Ensembl Gene ID:
ENSAPLG00000012109
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012670
38218104 - 38271414
53311