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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_3822407_3823286_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3822407 - 3823286
Intron Length:
880

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGCACA
5'SS Class:
major
3'SS Sequence:
TCTTGATCTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
CTTTCTTGATCT
Flanking Amino Acid:
EDIDHCSFSTTECKISVVFC
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.1
64.9
40.8
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
75.9
0.58
0.8
69.7
35.8
Minor 5ss
42.6
-0.8
2.8
60.1
44
Minor BPS
61.5
0.44
1.8
80.48
41.6

Associated Gene:

Gene:
GHRHR
Ensembl Gene ID:
ENSAPLG00000011541
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026665
3813334 - 3832911
19578
ENSAPLT00000022346
3813235 - 3831497
18263
ENSAPLT00000012089
3813334 - 3832911
19578