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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_38224360_38235766_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38224360 - 38235766
Intron Length:
11407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAAGGAT
5'SS Class:
major
3'SS Sequence:
ACTTTGGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TATTCCTTTACT
Flanking Amino Acid:
DCCHHSLRDEAEESCKCNGW
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
71.5
33.6
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
76.9
0.61
1
73.1
41.5
Minor 5ss
24.8
-2.9
3.5
36.8
47.7
Minor BPS
81
1.06
1.5
93.58
34

Associated Gene:

Gene:
KAT2B
Ensembl Gene ID:
ENSAPLG00000012109
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012670
38218104 - 38271414
53311