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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_3823420_3825107_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3823420 - 3825107
Intron Length:
1688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATTAC
U12 Branch Point Sequence:
ATTACCTCAGAA
Flanking Amino Acid:
IIAVVVLIAFRRLRCPRNYI
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
79.4
28.9
Major BPS
58.2
0.21
1
49.8
34.7
Major PPT
91.7
0.94
0.6
84.6
30.3
Minor 5ss
38.1
-1.3
3.1
48.5
47.7
Minor BPS
48.9
-0
1.9
64.91
40.7

Associated Gene:

Gene:
GHRHR
Ensembl Gene ID:
ENSAPLG00000011541
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026665
3813334 - 3832911
19578
ENSAPLT00000022346
3813235 - 3831497
18263
ENSAPLT00000012089
3813334 - 3832911
19578