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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_38243562_38245822_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38243562 - 38245822
Intron Length:
2261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TGGTAATTATCT
Flanking Amino Acid:
DIAGYKVNYTRWLCYCNVPQ
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
78.1
36.6
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
78.1
0.63
0.7
72
26.1
Minor 5ss
36.4
-1.5
3.3
49.3
46.9
Minor BPS
49
0.01
2
71.26
44.9

Associated Gene:

Gene:
KAT2B
Ensembl Gene ID:
ENSAPLG00000012109
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012670
38218104 - 38271414
53311