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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_38246015_38248703_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38246015 - 38248703
Intron Length:
2689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGGGT
5'SS Class:
major
3'SS Sequence:
TTTTTGTGCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
ATTAACTTAATA
Flanking Amino Acid:
KRTLILTHFPKFLSMLEEEV
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
70.6
39.9
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
75.1
0.56
0.9
69.4
41.7
Minor 5ss
32.7
-2
3.7
46.6
43.3
Minor BPS
68.2
0.57
1.5
75.94
34.7

Associated Gene:

Gene:
KAT2B
Ensembl Gene ID:
ENSAPLG00000012109
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012670
38218104 - 38271414
53311