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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_38254069_38255480_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38254069 - 38255480
Intron Length:
1412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TCATGTTGTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TCCTCTTTCATG
Flanking Amino Acid:
TDPAAMLGPETNFLSAHSAR
Intron Amino Acid Position:
496

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
83.8
29
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
69.5
0.44
1
64.6
41.2
Minor 5ss
28.5
-2.5
3.1
38.7
46.6
Minor BPS
53.6
-0
1.8
57.98
44.9

Associated Gene:

Gene:
KAT2B
Ensembl Gene ID:
ENSAPLG00000012109
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012670
38218104 - 38271414
53311