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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_38255690_38257948_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38255690 - 38257948
Intron Length:
2259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
TTTGTCTACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TGTACATGAATT
Flanking Amino Acid:
KEYITRLVFDPKHKTLALIK
Intron Amino Acid Position:
565

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.3
63.5
42.9
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
79
0.65
0.9
77.8
35.7
Minor 5ss
32.5
-2
2.7
41.4
38.2
Minor BPS
56.2
0.27
1.8
76.29
39.7

Associated Gene:

Gene:
KAT2B
Ensembl Gene ID:
ENSAPLG00000012109
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012670
38218104 - 38271414
53311