About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_38261303_38263007_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38261303 - 38263007
Intron Length:
1705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
AATAACTTAAGT
Flanking Amino Acid:
EYAIGYFKKQGFSKDIKVPK
Intron Amino Acid Position:
645

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
77
33.6
Major BPS
80
0.75
1
78.6
31
Major PPT
83.6
0.76
0.7
82.3
28.9
Minor 5ss
35.2
-1.7
2.9
41.4
39.1
Minor BPS
56.5
0.28
1.9
73.86
42.2

Associated Gene:

Gene:
KAT2B
Ensembl Gene ID:
ENSAPLG00000012109
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012670
38218104 - 38271414
53311