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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_38263152_38265993_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38263152 - 38265993
Intron Length:
2842

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGGCT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAA
U12 Branch Point Sequence:
TGCTGCTTTATT
Flanking Amino Acid:
FSVIIKKQKEIIKKLIERKQ
Intron Amino Acid Position:
693

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.9
36.4
Major BPS
62.4
0.31
1
64
32.1
Major PPT
82.5
0.73
0.9
76.7
36.2
Minor 5ss
31.2
-2.1
3.7
47.6
48
Minor BPS
52.3
0.15
2.1
72.4
44.7

Associated Gene:

Gene:
KAT2B
Ensembl Gene ID:
ENSAPLG00000012109
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012670
38218104 - 38271414
53311