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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_38267234_38267326_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38267234 - 38267326
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTACCAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTTCTTTACCA
Flanking Amino Acid:
TLKTILQQVKSHQSAWPFME
Intron Amino Acid Position:
765

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
90.4
20.6
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
70.1
0.45
1
71.6
31.8
Minor 5ss
33.2
-1.9
3.4
48.7
47.5
Minor BPS
77.3
0.85
1.5
86.93
31.8

Associated Gene:

Gene:
KAT2B
Ensembl Gene ID:
ENSAPLG00000012109
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012670
38218104 - 38271414
53311