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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_38274228_38274448_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38274228 - 38274448
Intron Length:
221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGTGTC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TTTTTTTTTACA
Flanking Amino Acid:
IRSYKEPSISGKLRRGDPFT
Intron Amino Acid Position:
558

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
72.7
38.4
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
98.8
1.1
0.5
95.2
16.3
Minor 5ss
35.4
-1.7
3.5
43.2
44.5
Minor BPS
71.2
0.66
1.5
82.45
31.9

Associated Gene:

Gene:
SGO1
Ensembl Gene ID:
ENSAPLG00000012083
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045230
38273657 - 38277851
4195
ENSAPLT00000034205
38273657 - 38277851
4195
ENSAPLT00000012570
38274089 - 38278018
3930