About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_38274621_38275082_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38274621 - 38275082
Intron Length:
462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TATGCCTCACTT
Flanking Amino Acid:
ASNKSSDKSVKQSSELSRAH
Intron Amino Acid Position:
501

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
0.9
82.6
29.6
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
41.2
-1
2.8
53
39
Minor BPS
52.1
0.14
1.9
73.19
44

Associated Gene:

Gene:
SGO1
Ensembl Gene ID:
ENSAPLG00000012083
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034205
38273657 - 38277851
4195
ENSAPLT00000012570
38274089 - 38278018
3930
ENSAPLT00000045230
38273657 - 38277851
4195