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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_38276820_38277421_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38276820 - 38277421
Intron Length:
602

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTTTA
5'SS Class:
major
3'SS Sequence:
ATTTTCTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTTAT
U12 Branch Point Sequence:
ATTTTCTTGACA
Flanking Amino Acid:
YFKQAQELVENQRVLSSVLE
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
78.6
31
Major BPS
65.9
0.39
1.2
57.6
41.3
Major PPT
80.2
0.68
1
76.8
36.8
Minor 5ss
49.9
-0
2.4
67.2
43.9
Minor BPS
80.5
0.95
1
84.28
28.2

Associated Gene:

Gene:
SGO1
Ensembl Gene ID:
ENSAPLG00000012083
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034205
38273657 - 38277851
4195