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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_38277619_38277708_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38277619 - 38277708
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGATGC
5'SS Class:
major
3'SS Sequence:
TGTTCCCTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTAATCA
Flanking Amino Acid:
QITTINCKRPTNSSVQMKSI
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
69.7
36.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79.6
0.67
0.8
74.2
30.9
Minor 5ss
40
-1.1
3.1
51.1
39.8
Minor BPS
56.6
0.2
1.9
74.08
38.4

Associated Gene:

Gene:
SGO1
Ensembl Gene ID:
ENSAPLG00000012083
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045230
38273657 - 38277851
4195
ENSAPLT00000034205
38273657 - 38277851
4195
ENSAPLT00000012570
38274089 - 38278018
3930