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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_3828452_3831394_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
3828452 - 3831394
Intron Length:
2943

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCCATG
5'SS Class:
weak_major
3'SS Sequence:
GTTTCTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCATTGGTAAAA
Flanking Amino Acid:
ESEKHGNATTAGIVRRNCTK
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.2
65.3
46
Major BPS
100
1.24
0.5
100
0
Major PPT
83.5
0.75
0.9
80.8
36.8
Minor 5ss
66.2
0.55
2
74.6
41.7
Minor BPS
42.2
-0.6
2.5
56.42
42.9

Associated Gene:

Gene:
GHRHR
Ensembl Gene ID:
ENSAPLG00000011541
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012089
3813334 - 3832911
19578