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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_3829742_3831394_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
3829742 - 3831394
Intron Length:
1653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCCATG
5'SS Class:
weak_major
3'SS Sequence:
CTTTTTATCTGAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATATATTTCACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.2
65.3
46
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
64
0.31
1.7
77.4
35.6
Minor 5ss
66.2
0.55
2
74.6
41.7
Minor BPS
55.3
0.25
1.9
76.17
40.3

Associated Gene:

Gene:
GHRHR
Ensembl Gene ID:
ENSAPLG00000011541
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026665
3813334 - 3832911
19578
ENSAPLT00000022346
3813235 - 3831497
18263