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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_38408815_38410233_R

Intron Information:

Intron Rank:
144498
Intron Class:
major
Intron Phase:
Intron Coordinates:
38408815 - 38410233
Intron Length:
1419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TCTGTTATAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
77.2
37.6
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
88.2
0.86
0.8
81.3
36.4
Minor 5ss
37.2
-1.4
3
46.5
42.8
Minor BPS
49.1
0.01
1.8
69.06
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025031
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027001
38406670 - 38410345
3676