Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_3846915_3847238_F

Intron Information:

Intron Rank:

143425

Intron Class:

major

Intron Phase:

Intron Coordinates:

3846915 - 3847238

Intron Length:

324

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTGAGTTCT

5'SS Class:

strong_major

3'SS Sequence:

GTTCTTTTTCTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATGAT

U12 Branch Point Sequence:

CTAACCTAAAAG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.73

79.6

29.1

Major BPS

84.6

0.86

41.2

Major PPT

0.77

0.8

77.1

37.1

Minor 5ss

39.8

-1.1

55.2

42.1

Minor BPS

48.7

-0.2

1.9

54.3

46.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027270

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035026

3846799 - 3847924

1126