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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_38513944_38514948_R

Intron Information:

Intron Rank:
138420
Intron Class:
major
Intron Phase:
Intron Coordinates:
38513944 - 38514948
Intron Length:
1005

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTCCA
5'SS Class:
major
3'SS Sequence:
GTTCACGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TCACCCTTATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
66.1
39.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
73.2
0.52
1
65.5
40.7
Minor 5ss
40.7
-1
2.7
51.5
44.8
Minor BPS
59.3
0.29
1.6
65.61
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022000
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033385
38512640 - 38516682
4043
ENSAPLT00000026711
38512640 - 38547114
34475
ENSAPLT00000025935
38512640 - 38553702
41063
ENSAPLT00000048127
38512640 - 38515230
2591