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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_38524963_38597956_R

Intron Information:

Intron Rank:
135480
Intron Class:
major
Intron Phase:
Intron Coordinates:
38524963 - 38597956
Intron Length:
72994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGACCA
5'SS Class:
major
3'SS Sequence:
CCTGTTTTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAA
U12 Branch Point Sequence:
TGTCACTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
0.9
63.1
36.8
Major BPS
69
0.47
1
69.9
32.6
Major PPT
73.6
0.53
0.9
73.7
35.6
Minor 5ss
26.9
-2.6
2.9
28.7
36.7
Minor BPS
62.6
0.39
1.6
72.76
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020317
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028566
38523886 - 38598017
74132