About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_38543377_38546788_R

Intron Information:

Intron Rank:
138425
Intron Class:
major
Intron Phase:
Intron Coordinates:
38543377 - 38546788
Intron Length:
3412

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTCTGTTTATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.9
82.8
36.4
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
84.8
0.78
0.8
83.8
31.2
Minor 5ss
33.6
-1.9
4.2
55.7
48.5
Minor BPS
49.2
0.02
2.1
72.46
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022000
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026711
38512640 - 38547114
34475