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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_38554195_38566583_F

Intron Information:

Intron Rank:
132092
Intron Class:
major
Intron Phase:
Intron Coordinates:
38554195 - 38566583
Intron Length:
12389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCCATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CATTTCTCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
73.7
32.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
76.2
0.59
0.8
73.7
30.2
Minor 5ss
25.2
-2.9
3.2
30.3
43.5
Minor BPS
50.3
0.09
1.8
68.67
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020976
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025650
38554144 - 38567075
12932